Cell Culture / Organoids / Bladder cancer PDO

Bladder cancer PDO banking protocol

Patient-derived bladder urothelial carcinoma organoids: embed in a urothelial niche (EGF / FGF / Noggin / R-spondin ± Wnt, A83-01, nicotinamide…), then QC with CK7/CK20 / GATA3 / EpCAM and run drugs.[1][2]

Use cases

Bladder PDO—not T24 / 5637 spheroids and not a full normal urothelial expansion course.

UseFitReadoutNotes
Cystectomy / biopsy PDO biobank + drugsRecommendedHistology fidelity and drug vs clinical response[1]Lee platform covers pre-/post-recurrence samples and interconverts with xenografts.
Normal urothelial contrastContrastToxicity / selectivity contrastKeep normal and tumor dishes separate; do not mix drug plates.
T24 / 5637 spheroids as PDODo not mixSpheroid diameterCell-line spheroids are not PDOs; in vivo uses transplant models.

In one line

Bladder-tumor clusters → dome → urothelial niche → brief Y-27632 → mechanical split → CK/GATA3 → drugs.

Protocol overview

  1. Ethics + cold chain; log grade / stage, muscle invasion, and prior therapy
  2. Trim necrosis; collagenase ± Dispase to clusters; brief RBC lysis (MC427) if bloody
  3. Matrix domes; urothelial niche (EGF, FGF, Noggin, R-spondin ± Wnt, A83-01, nicotinamide…)[[1]]
  4. Brief Y-27632; score cystic vs solid growth
  5. Feed every 2–3 days; mechanical microcluster splits by growth
  6. CK7 / CK20, EpCAM, GATA3 if available; mycoplasma; match the primary
  7. Drugs with vehicle and standard arms; in vivo uses transplant SOPs (T24 / 5637…)—not this page

Step 1 · Tumor processing

  1. Log site (primary / recurrence) and muscle-invasion status.
  2. Collagenase ± Dispase to clusters; filter and spin; brief RBC lysis (MC427) if bloody.
  3. Do not grind to pure single cells—clusters improve take.

Steps 2–3 · Niche and expansion

  1. Start with a full urothelial recipe[1]; log whether Wnt is withdrawn.
  2. If stroma overtakes, raise A83-01 or shorten digest.
  3. Bank by grade / subtype—do not mix lines.

Steps 4–5 · QC and drugs

  1. CK7 / CK20, EpCAM; GATA3 if available; mycoplasma required.
  2. Include vehicle on drug plates; interpret vs clinical drug history[1].
  3. In vivo / orthotopic bladder uses transplant SOPs—not this page.

Niche reagents (titrate)

Literature starting points—not on-site prescribed doses.

ComponentRoleOn-site
EGF + Noggin + R-spondin ± Wnt3aUrothelial core[1]Open →
FGF2 / FGF10(按文献)Common in epithelial nichesOpen →
A83-01 / 烟酰胺TGF-β block; human epithelial stabilityOpen →
Y-27632 短期Seeding windowOpen →
红细胞裂解液Brief RBC lysis after bloody digestsOpen →
胶原酶 II 型Digest tissue/tumor to epithelial clustersOpen →
Dispase IIGentle dissociation with collagenaseOpen →
类器官冻存液Banking cryopreservationOpen →

Small molecules for this SOP

Deep-links to catalog SKUs; all prices on request. Growth factors (EGF/Noggin/R-spondin, etc.) are proteins—see that category.

CompoundSKURolePrice
Y-27632 2HClMCK1042ROCK block; brief survival boost after seed/splitOn request
SB 202190MCK1279p38 block; human epithelial organoid stabilityOn request
A83-01MCK1825ALK4/5/7; limit stromal overgrowthOn request
NicotinamideMCK1836Common in human epithelial organoid mediaOn request

Proteins / peptides for this SOP

Growth factors and gastrin deep-linked by SKU; all prices on request. Activity/reconstitution per lot COA.

ProductSKURoleTypePrice
Recombinant Human EGFMGF30001Core epithelial growth factorProteinOn request
Recombinant Human NogginMGF30002BMP antagonist; ENR / PDO niche; dual-SMAD neural inductionProteinOn request
Recombinant Human R-spondin-1MGF30003Wnt amplifier; long-term expansionProteinOn request
Recombinant Human Wnt3aMGF30004Human colon / CRC / ductal / gastric / ovarian / liver WntProteinOn request
Recombinant Human FGF2MGF30006Prostate niches; also common in brain / PSC inductionProteinOn request
Recombinant Human FGF10MGF30007Prostate / pancreas / breast / lung / gastric / ovarian / liver / endometrial / kidney nicheProteinOn request

QC antibodies for this SOP

Common IHC/IF markers before banking or drugs; deep-linked catalog antibodies. Dilution/species per datasheet.

MarkerProductSKURole
CK8Cytokeratin 8 AntibodyMCAB5383Luminal / epithelial lineage
CK19Cytokeratin 19 AntibodyMCAB5312Ductal-like epithelium; pancreas, some lung / ovarian / bladder / HNC
CK20Cytokeratin 20 AntibodyMCAB5332CRC / some gastric / urothelial / esophageal QC
EpCAMEPCAM AntibodyMCAB5377Pan-epithelial; multi-tissue PDO
E-CadherinE Cadherin AntibodyMCAB1155Epithelial integrity / EMT contrast
CK7Cytokeratin 7 AntibodyMCAB5547Cholangiocyte / urothelial / some tubular / esophageal / thyroid / mesothelial epithelium QC

Culture supplements for this SOP

Existing cell-culture SKUs (B-27 / N-2 / glutamine / antibiotics); titrate per insert and literature.

ProductSKURole
Advanced DMEM/F12 MediumMC410Serum-free organoid basal medium
B-27 Supplement (50×)MC317Serum-free basal supplement for epithelial / neural organoids
Stable glutamine (Ala-Gln, 200 mM)MC301Glutamine source for Advanced DMEM/F12 systems
Penicillin-Streptomycin (100×)MC306Early banking sterility; consider withdrawal after lines stabilize
Organoid Basement Membrane Extract (BME)MC4113D dome / sandwich embedding
Collagenase Type IIMC412Digest tissue/tumor to epithelial clusters
Dispase IIMC413Gentle dissociation with collagenase
Accutase Cell Detachment SolutionMC414Optional gentle enzymatic passaging
Organoid Cryopreservation MediumMC415Banking cryopreservation
Mycoplasma Detection KitMC416Pre-banking sterility QC
HEPES Buffer (1 M)MC305Organoid medium buffering; add to final concentration per recipe
Collagenase Type IVMC421Dissociation alternative; contrast with Type II
Organoid Primary Antimicrobial (Primocin-class)MC423Early primary / PDO / PSC banking contamination control
Ultra-Low Attachment 96-Well PlateMC425EB formation / spheroids / drug plates
U-Bottom 96-Well PlateMC430Spheroid settling / co-culture plates; complements ULA
RBC Lysis BufferMC427RBC removal after bloody digests

References

  1. [1] Tumor Evolution and Drug Response in Patient-Derived Organoid Models of Bladder Cancer. Cell. 2018. PMID 29625057
  2. [2] Mouse and human urothelial cancer organoids: A tool for bladder cancer research. Proc Natl Acad Sci U S A. 2019. PMID 30787188
Disclaimer: Research use only (RUO). Not clinical guidance or an institutional SOP. Human tissue requires ethics approval. Inline [n] maps to the reference list. Titrate concentrations and digest times locally.